Scaffold Ga0335039_0001846

Overview

Basic Information

• Taxon OID: 3300034355
• Scaffold ID: Ga0335039_0001846
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13968
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F028148	Metagenome	192	Y
F058816	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335039_0001846_12262_12711	F000922	N/A	MGMPKEVWQRACSLYLAGMEWDAIAEKLKLNKTTLCKRASLEGVTKVKKEMQTVCKEKKTESLETLSALVRNKLAADAASTLERIDSYSLDGIKDEGVRETILGSVAKRSALVFGWSETGEQASVSINLLGSMPDRMPMEIEVKESETK
Ga0335039_0001846_13611_13967	F058816	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNAGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHR
Ga0335039_0001846_9869_10468	F028148	N/A	MKTIHQVIHEIQFFDPAIRAFDAHDLPQSVRAYLHHNYRMDARLTDEEQQLVETSFEPFADNLREAFQDDPRPDATRFYLFDDLSLYVRTNAGPELWADAQVFVVERILPNMRLSRLEADLMREIGMDDQVSEVRDDFFSSFAHVLHRDCGIPHCDARNHWNAWSRQAPDSLTESLELGGSESGRAEGIRFASEYTVKA