Scaffold Ga0335039_0000323

Overview

Basic Information

• Taxon OID: 3300034355
• Scaffold ID: Ga0335039_0000323
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33779
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050308	Metagenome	145	Y
F067450	Metagenome	125	N
F082207	Metagenome	113	N
F095348	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335039_0000323_1422_1829	F050308	N/A	MLLTLCSLAASCQITKVDNGFFISRDYAEYIAARFDSLDAYKIAYGECVNRAVDCDSLLYQSERLKKTLNDNYNMQSDMLRIKDEMIQSYERGNIICNDYAKQLKKQTRLKKAWKITTYAFISVSLGALTYSILK
Ga0335039_0000323_17119_17457	F095348	N/A	MACCNCCENTLILGCLNSCDAVFDTGIVADSLTEGVWVLQLSFGSISIYYSIDVLDGETVIFTMTNLNENYTYTGQIIDPNGEVVKIEVDGIEYDCIEFSTKVGLSNNQINL
Ga0335039_0000323_19676_20164	F067450	N/A	MLSLITLSIFAAFAIKFLHYCIGSPVQGEYYTGRIFSAYGKFISKLYLDFEAKEKNRVWANYNAWKQKRDKELNEQLQNKTANEADTIYKDYLQQVEILYNDVENNMKNNPWSMLGACPICFGTWVSLFTFTFFVIFVPLPWWFIFIGTPAAVIISRYIKIS
Ga0335039_0000323_20660_21058	F082207	N/A	MNCVAKAVNKLFPNQDLTEFYDRKLGVGMGDIQRMIPIDLSVWPVYCNHHKCLNFDLIRQLPKTEHFIPLFLFSSVMSDRFKLHCEFALWDRNTVVVNDIEHDADEYFKRNKVVQVAALIKFETHEILIAKK