NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364943_0039262

Scaffold Ga0364943_0039262


Overview

Basic Information
Taxon OID3300034354 Open in IMG/M
Scaffold IDGa0364943_0039262 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 23_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1537
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000667Metagenome / Metatranscriptome949Y
F015101Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0364943_0039262_3_572F015101GGAGMALKGWVVHKVNRLFTRVDLPPRATPLGKAVMRHKGEKREPELRTTAGHDVLPRPQHLGAYAPLVAAMREELEQFVASHVRMHLAIAEQDRYLLTSIEVECVAGDEPRELLHRFIREFKPRQIKAYIAKEVIGRLPNASAIDLAHFGGLNVAADGGNGVEADEAYGELLAELRSSEPHTASRPYQVTLKG
Ga0364943_0039262_576_935F000667GGGGGMKSGRSRKGRQHGNGAPDEHVEAPLIWTFTGPFATCLGDMEDTFRRAIIQVGDVSRIAVQIDLSLPALKKRVDAGESIQPAWGQFVERLTQRYGLPTGPRVRHVKMAGPLATMVIAYRR
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