NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0364943_0009474

Scaffold Ga0364943_0009474


Overview

Basic Information
Taxon OID3300034354 Open in IMG/M
Scaffold IDGa0364943_0009474 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 23_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2887
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021725Metagenome / Metatranscriptome217N
F052026Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0364943_0009474_25_510F021725GAGVPANDVVPDGAVPLVGYREWSIRTEDHGRPRLLSLFHPTTWPHDGPISAICMRPVTWPYPPVQPIHGTVPDESCQCGIYAFRRPVFESLNGASGPKVRGVVLGWGRYILGSLGWRAQFAQLTALLQHEEDPAIVDDLADRYDVIVLPDLERIHLVTDATAA
Ga0364943_0009474_2641_2886F052026N/AGLERDQLRLIGSRPGTAGKGPRLYAGQRICGASKCRTVLSRYNHTDLCWLHEPRHEYLSAVRGRRPAEVEVLEQLVPAKAS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.