NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335013_0275039

Scaffold Ga0335013_0275039


Overview

Basic Information
Taxon OID3300034284 Open in IMG/M
Scaffold IDGa0335013_0275039 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1082
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001129Metagenome / Metatranscriptome768Y
F059754Metagenome / Metatranscriptome133N
F060863Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0335013_0275039_241_492F001129N/AMLGQGGTMEFVDGIVTGKNYDFLVVNTAATFTTLTGTGSENLLSAYNFSGKSLSAGIVISGRNGGKITAVTPSVGSVIGFTFL
Ga0335013_0275039_3_188F059754N/AQLQVAQDFISALTNDPSEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIP
Ga0335013_0275039_496_795F060863N/AMFIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFLNSFQSYAFFVFYSNSWQPFMQRANTDSANAAEVAFINCLEVRMYNLLNA
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