Scaffold Ga0335013_0144493

Overview

Basic Information

• Taxon OID: 3300034284
• Scaffold ID: Ga0335013_0144493
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1623
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F003603	Metagenome / Metatranscriptome	477	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335013_0144493_1031_1216	F034924	N/A	VFGTKYINYYTIVSAADEYQAAEIANLRPSTDWNELPMDDVIEATDVYLDEDDTVDLQLN
Ga0335013_0144493_1438_1617	F000441	N/A	LRKRRKKMKMSDEYLNERLNKAQKLLWGGSETENIEAHNIISKLIKDRIEGDEGQYDSL
Ga0335013_0144493_318_728	F003603	AGAAGG	MKTKEEQVGELLANSLEDHFFNPAALGRYLADQPSYTLDRVMEVVAWVIEKQARRYDREVETNGTISEGLAIASKLDLVIDKIKEQNELKNVKLPITTKERRAIVKALPKEQEQSYRYSWLHETNNQSNTFVNQGM