Scaffold Ga0335013_0142679

Overview

Basic Information

• Taxon OID: 3300034284
• Scaffold ID: Ga0335013_0142679
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1636
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015339	Metagenome	255	Y
F085154	Metagenome	111	N
F101175	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335013_0142679_3_290	F085154	N/A	LFPKKYDHAESTITTADLFAEDWVVVPNKLFKDVLDDLNAGKTIRRKSWHPDWGVGKYSRYGKIIYLDLIADDWEVVDVVAEVDKNQQDIKDGKY
Ga0335013_0142679_467_727	F015339	GAG	MEADPKILSEQYIRGRIYSFVKFRKYLQEIAYIFCEEFQYDKDDIIEVSLSDDGKTVWIHFDSGTIGFASELLWDKNVRETFKKIL
Ga0335013_0142679_949_1218	F101175	N/A	MIGKEAIKYLHAGYTLWRKAWEPDQKCKAYFSDDMWSVKIDINDPILGALDTHLVPQWVPEKPEFSNYVCYYDIIDSGDLLEDDWEIVE