NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335013_0129317

Scaffold Ga0335013_0129317


Overview

Basic Information
Taxon OID3300034284 Open in IMG/M
Scaffold IDGa0335013_0129317 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1738
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000865Metagenome / Metatranscriptome855Y
F002300Metagenome / Metatranscriptome573Y

Sequences

Protein IDFamilyRBSSequence
Ga0335013_0129317_10_546F000865GAGMIKIDEAKIIARNDEVKAIEKTVEEFRARKEKQIDKRIETKASMTLPHPFATISHISILTFTSFICTFNIFISIFSSLVADLLDHHFQTFIIGNLSDCKLQQLSRQTASIQADTVVKTLANADSIRTFKIPGNWPEVYYKNRSQNPLVPSHLLSGRVRKSETKFHPNSFIFNYLDSSR
Ga0335013_0129317_668_1582F002300GGAMATVYSTRSCIPKLCCSLAAVGLFIAGILITGAYPHSNLNDLNSNRTQKEAYISSPGNLTLAAETLAFIEASNKEIHDAMDKALDRIERSMQRIPELAEQMSRSTRAAEPSQALDQAAAIFGDYKPKPQYQLSEYATGNRQRWKRNTGVESKESSTASTTPKTETTAEWFLQNLAYSLFPFTGFTSIGAALHLATGLRRSKRAPSVYPFQVTDLLDYEARKKHSQNKILGEKIAKILHQNTDFSDEIAANSQTPSEKLKKDPIMALVTKTISTYMLVKHSKNAKELSRKENLSPWGEPFFKKKE
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