NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335013_0035498

Scaffold Ga0335013_0035498


Overview

Basic Information
Taxon OID3300034284 Open in IMG/M
Scaffold IDGa0335013_0035498 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3681
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001805Metagenome / Metatranscriptome631Y
F023328Metagenome210N

Sequences

Protein IDFamilyRBSSequence
Ga0335013_0035498_188_1417F023328AGGMTVYTPTYRVTIAGTIQTSTTLQNGTITYGRNDFFEATQPSYCNIELLNKDGASPVVELLDVVIIEVTNSAGSFVKLFTGEVSGVYNRLEAAGAGGKPNTLQIQAIGALGLLVKRTAGAVSYPEELDGARIERILQETLFIAWEDLSNTQTWDDFTTETWDSYGIQGIDTIDAGRYEVLARTAEIDQAFNLTDETQQSGLGYLYDTTDFEIGYADAERRITNYSDNLIELDANLANADIQTRLQTADIVNSVVIQYDDPVLEEAAQNDTSINDYGLLQEIRKTILAQQLDAQEQAVNFVNFRGTPRTSLEEVSVNLANDAMTNTVRDDLLAVSMDTLLYVDNIPVGLISSGFFEGFVEGWTWSLGRRNLELTMSVSNSIYSTLDVQWEDYNAVIQWQNLDNTTTWLDVI
Ga0335013_0035498_2096_2317F001805AGGMATANKIMVGIDDQVIELKGAEKEAFLADREATAEEQRLLEAEYKAKRDARESAITKLGEIAGLTKEELDAIL
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