Scaffold Ga0335013_0003824

Overview

Basic Information

• Taxon OID: 3300034284
• Scaffold ID: Ga0335013_0003824
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11705
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (79.49%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F008812	Metagenome / Metatranscriptome	327	Y
F035281	Metagenome / Metatranscriptome	172	Y
F057320	Metagenome / Metatranscriptome	136	Y
F061803	Metagenome / Metatranscriptome	131	Y
F086678	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335013_0003824_129_833	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKVAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH
Ga0335013_0003824_1417_1647	F086678	GAGG	MAKYYIKCGTLELIYSCNKCPRDAAMDAIWETNENDTLDEHFYIDERGYRDYTNADGHTCVLHTTHILKDAGWSIE
Ga0335013_0003824_1996_2355	F008812	GAGG	MIQWVGILITILGLAYTGVKDYQKGDIKFPPMPQKPALTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYETTPQPYQAQGSTAVAGSYGSQGTPSYRYGQSPQASTNPIR
Ga0335013_0003824_6066_6209	F061803	GGAGG	MQIDINKQEAWKLIDAVKAYLKDYTLTGQVHKTFDSITKKLKEVVKE
Ga0335013_0003824_8362_8577	F035281	AGGAG	MMKFAFVFALMVLGSSAYAGECVNGNCTLRSRVVNVTQEVISVPVTLTRRTVEATRNVGRRTVARVRSVVR
Ga0335013_0003824_845_1414	F057320	AGGA	MSYVGLYDDAGSKNAFYIIKDKKINRKRVGFKEFENEQEAKFAHRVQSHLAQFDLAPMVYGDVGMIRRYDGELTAYGYLTEVARTMPECHDEDCDGECFQSECKNGTTICELVYDLGEHGLEYNDSHKGNFGYVRRKGSWVPVVIDLGIESFTDWDEDIYGKFDYDADEDIDSYGACNCVHCQQFRDRG