Scaffold Ga0335013_0000002

Overview

Basic Information

• Taxon OID: 3300034284
• Scaffold ID: Ga0335013_0000002
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 435747
• Total Scaffold Genes: 443
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 169 (38.15%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053826	Metagenome / Metatranscriptome	140	N
F065713	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335013_0000002_250784_251173	F065713	AGG	VKRELELQILDLYRRYPQPRSFAEEVELTAWNGVVINTEDFFMLARPVDIHDPEERWRDAAHVYHRLCHNCWLITIYCGISQNNPCNFAPYRLPYIAWSRRDCPLRIYETSKLQKRCDLLTPLKIRSYH
Ga0335013_0000002_276638_276886	F053826	AGG	MTPARITAGLLLIAFACLAMALLTSCASIPVPPFGERRGELGNLQVGVTVKYIPAQNPDLPGDNNLSYAWSKFGEAKALKDK