Scaffold Ga0335007_0319034

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0319034
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1009
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070119	Metagenome	123	N
F071246	Metagenome	122	N
F072347	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0319034_4_216	F070119	N/A	MNLNSYSAFDFVIPNCLEPGDIIQWQEEIYTVKSFDLLSDGFIIYAIDDMEEDVELLIPDNTILSLMEEQ
Ga0335007_0319034_529_771	F071246	GAG	MGKSQTESTADKIVALLADGRISQAQWRLWIPRRITENNKMVIANAKNFADGINEIIADEQITLSKELIFDYQTGHDNGQ
Ga0335007_0319034_761_1009	F072347	AGGA	MDNRTKAEILVQFTQDSFNDEEYSEFFDYNDLGIPLSIAIVQEMVILTDEGEQLLDETWKDLCLLFEADPESEYESIDDLTVK