Scaffold Ga0335007_0217798

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0217798
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1311
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F021111	Metagenome / Metatranscriptome	220	Y
F044483	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0217798_1198_1311	F021111	N/A	DNLNQPSIQTDGGQIKETDQMGREKFWEDMGRPDDGK
Ga0335007_0217798_725_973	F044483	N/A	MNRAEKTIYEDVSKATEALKWTVEKIESYLNKCLNVENGHCTLTWKHDDCKVLMDILYDLTEDDKYKEVPWEFNPKQQNIWD
Ga0335007_0217798_990_1211	F002489	N/A	MTENKEQPQNLEDNLPMVNYIMLHRIYDLLTLIANKLVGPEDVSKMVEYHNQGFLLGPTPSFTPQGADEENLR