Scaffold Ga0335007_0127741

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0127741
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1846
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007029	Metagenome / Metatranscriptome	359	Y
F015095	Metagenome / Metatranscriptome	257	Y
F029049	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0127741_1400_1846	F029049	N/A	MSRVAKVVLDRSQEITAHQKGLDRAIAINADPTDANQFGQRFANYHEFIWQKAEACGAETAVANYFGDFGFVPKVNTFHDEADVGQNIEVKWTKHANGHLIMQNRPNPRPNDVAILVTGFSPVYILLGWMPVHMAMQPKYKHPYQDNYW
Ga0335007_0127741_548_1156	F007029	AGGAG	MGFLDNYEDVNARIKRFRSEFPSGRLIAYIEDIDIIKGTVLVKAEAYREFEDLVPSAVDYAFGNVATLTNNMKKWLIEDTVTSAYGRVIGLLTPSEHARPTVQDMQKVENLPADGDPWSTKASIEDMATMASSILEIGTQLGGELVAEAPQCSHGHMVWAEGTAKATGKPWACYKCTERVRANQCTPRWYVLASDGKWKPQV
Ga0335007_0127741_56_271	F015095	GGA	MEQAQLAVGIALGSFTILGLWAGLIRKMVKFYLSELKPDGNGGHNLAGRVERIEQRVDRIYEILLEDRLAK