Scaffold Ga0335007_0125063

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0125063
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1871
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036694	Metagenome	169	N
F067741	Metagenome	125	N
F076085	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0125063_1342_1764	F036694	AGCAG	MLHELYFKLLAEKPECIDKYNKDGKLYILGLYRLRDLFRNRTRTLQHIDGNTSSLHEMSNYEIRDFADEPIELLPIDEINIERIKNCIFDGLLNQDHDIEVFVMAQIEPLYRMEQRTKINRSSLKKAYENARIKLKNQLK
Ga0335007_0125063_506_664	F067741	N/A	MKKFKIEFLDSDKCIAFTKLTKWETIEDCRLYAYVVMMNKVKTIQTFNITAV
Ga0335007_0125063_973_1182	F076085	N/A	MKDLLSVSEFASLHSVSHQAIYYKLKTNQIKYIMIGKTKFIDKGSKYKKRAKNNFIDNQQVKNKIKNKC