Scaffold Ga0335007_0076732

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0076732
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2520
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F031792	Metagenome	181	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0076732_1063_1212	F083706	GGAGG	MEHLTPRGWLVAGILIGLAVWGLWEVASHLLWTGSGWEWCENLLECEGK
Ga0335007_0076732_1212_1409	F031792	GAGG	MGYEPELNDPVFYAGEYEEAVKCFICGDQLDPDDIVWANVEGQIVKEGNDTSWCVVCLPSERGEQ
Ga0335007_0076732_1527_1685	F000821	AGGGGG	MNKEYLEAKFDLCINQAEKNIKEEEIAEAIANLRRANSALSQLFGFEEEDNE
Ga0335007_0076732_1678_1929	F001477	AGGAGG	MSNIYTIHPPKSDLILFYEVVEPDGSNTWGGADAEQCMQWLTLAPTGSRVLVSAWDSDEEDAHLVGQTIDITEIIQRAREVGR