Scaffold Ga0335007_0059720

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0059720
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2916
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011473	Metagenome	290	Y
F016922	Metagenome	243	Y
F057879	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0059720_1718_1909	F016922	AGGAGG	MNPIRINSRAIQCVADATGATEYAIRYGGRDFLVTAHSRLEADIAVEYYRPDEPDAAQPELLP
Ga0335007_0059720_2790_2915	F057879	N/A	MTEPSTEQTNPRDTVRPEPVPAGGQQEPESPFAGASQIPPWE
Ga0335007_0059720_661_975	F011473	N/A	MNWKKYITDPLTNRPKRGAISRIAALLGTHYGNVRRMFDGIWTPTEQEAKGLRAIVESRTNLAPKKRSDAGKKRGEYRKRAVAKSGVAAPQLKALRSAKNTARK