Scaffold Ga0335007_0032702

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0032702
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4074
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F044984	Metagenome / Metatranscriptome	153	Y
F083706	Metagenome / Metatranscriptome	112	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0032702_1004_1303	F044984	GGAGG	MTDEVKKRVATASRKAVGHRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTALSVGVHTRATGANSFAYSGNASADEGDNGGEA
Ga0335007_0032702_1373_1609	F001477	N/A	MGDSIHPKKSDLILFYEVVEAEGENTWGGADAGQAIQWLTHAPVGSRILVSAWDSDKEDAHLVGQTLDITEIVKAASL
Ga0335007_0032702_1861_2016	F000821	GGAG	MNKEYLEAKVDLCLKQAEIDIQQQEIARAIKNLERANSALSRIFNLEEENE
Ga0335007_0032702_2334_2513	F093237	GAGG	MNYKYTKGEAFKMTNQELLEAVTAREIAPSWVVGTGYKNSRQVAIEYLEEQIAKEREGE
Ga0335007_0032702_3007_3159	F083706	AGGAGG	MKHVTPRGWFVAGIFFSLAVWGMWEIASHLLWVGDGWQWCENLLTCEEAK