NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0029648

Scaffold Ga0335007_0029648


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0029648 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4300
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013634Metagenome / Metatranscriptome269Y
F025485Metagenome / Metatranscriptome201Y
F031456Metagenome / Metatranscriptome182Y
F051709Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0029648_2444_2644F025485AGAAGMENVRKYLPLIVGGIVAVAFFFISRKVRQSSGNNQERAEILEKAREAKLAKSILKKSENEESPSNI
Ga0335007_0029648_2795_3163F013634N/AMPVQLAPLVGAGLGALQQSKIEKALAGEKTYTKPKTIFGKLIGGVSGRTAASEASASVKTAPLNEKVMNSLQPSSKTQGTPITGGISFGGEATRKTYLPFAIVAAVIAAFYFLRKKGGRRRR
Ga0335007_0029648_3168_3827F031456N/AMALIGSFPASASAVFNLDFLPEKVLVVNTQNPQQALSNFSVVCSGMQLMSITNISRLTALAQFDSGAVLNDAAPIASSYLRLATGRINKATTITGTNSVASTRDFFAASTNISNVARRAVEQSINASANATFDNFEAIIFDSTNILRAQITFANGFTDEYSVAEINALYANYHISDAQGQLDGLSVIDADSGAGLISQVVLFNGSGGSTVVLKSDYVQL
Ga0335007_0029648_538_780F051709N/AMIPNRERLKIEVAIRPHIEAVEVINLELQKVNGSIERKWRQLDDFSASWSYTMWQNWKDAMQGEISYREYLLIILEAYKK
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