Scaffold Ga0335007_0026553

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0026553
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4562
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F007691	Metagenome / Metatranscriptome	346	Y
F018135	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0026553_1447_1620	F003212	GAGG	MKDKWLITLEVDTYDGDPAKWNWTDLVGDESWVIESQFKGRVLPASEGESDDTIQGN
Ga0335007_0026553_145_429	F003863	GGAGG	MESKQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWVIAGDSKLTIAIHTRANATPAFTGGTGDEGENEGNNGGEA
Ga0335007_0026553_2806_2961	F007691	GGAG	MDTLEQLINEIYEDNYSHLEFDEAMGGESCSCPIHTTLNTIVKYRDGKEGE
Ga0335007_0026553_2961_3119	F018135	AGGCGG	MTIERVQHNGALIVSQFIGEGAGEYLFTRTYYGYTIKQAKAQFKIALAGEGK
Ga0335007_0026553_499_741	F001477	AGGAG	VSNIYTIHPRKSELILFYEVVEAEGENTWGGADAGQAIQWLAHAPVGSRILVSAWDSDEEDAHLVGQTIDITEIVKAASL