Scaffold Ga0335007_0024671

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0024671
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4742
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F033321	Metagenome	177	Y
F038999	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0024671_1839_1982	F033321	AGGCGG	MSELEILRAEYARAIAHPLFDDPAYYCVLLDLIQNRIDEIEARYANY
Ga0335007_0024671_1982_2428	F038999	AGGAG	MTSTQKTQAKLSFPCSCNGCRNYPTRPAEIWHESQIASKAQGYFFTKDTMRFFKSRIADFKPVGISPRGVDSLMVIVSNKRDDDPRYYEIVTLCPYGELAREWATDSDGAPITQYETLNKARKSARWNCTIAPQLCECHGCQLDKAGR
Ga0335007_0024671_621_782	F003212	GGAGG	MKDKYLVTLEIETYDGDPREWDWDKLSTGEDVIKIIESQWKGRVLPTNEGESK