NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0018632

Scaffold Ga0335007_0018632


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0018632 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5493
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (52.63%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013514Metagenome / Metatranscriptome270Y
F016800Metagenome / Metatranscriptome244Y
F032252Metagenome / Metatranscriptome180Y
F048267Metagenome / Metatranscriptome148Y
F063620Metagenome / Metatranscriptome129N
F072267Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0018632_1487_2014F072267N/AMTERIGYKLNPNKLKGAPQSILPYFVGAFYYTEDYEYFDVIKPYLEIPEKPKTLEEIQQELDEKFEKLIERTKNSFYKSKYIAETLYDTKFNRIIENFEYAKEHGQFPLKLTYSNLIATGSNITSSFVIKQGNKHEGYYTFGNCRSFRYYMPTKPNFIVRFCMDNLLGFKWIDDK
Ga0335007_0018632_188_316F048267N/AMTDEEWETTLKSMNEGVKKWVNEEIDKIKYSIIKDIIDKELK
Ga0335007_0018632_2011_2163F013514GGAMKLEELQKYLDDNNITLEEYMRANMITDEERKYFDKIWMDAIYKNLGEDT
Ga0335007_0018632_2236_2520F016800AGGAMLDAFTDYPIPSYGDVEGEKAPIRRAKILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEARLDDGIQFTYEELKTLPWTEISFPHSI
Ga0335007_0018632_24_191F032252N/AMKLYRYKKDGHLYTLYEQLRPFYNLVAVPYFPNQGVLAKSKRNISMNDFIVVAER
Ga0335007_0018632_2889_3098F063620AGGAMTNHIIPKVAYIPLEYHMSVEDFLEVWEDMEMEDEPTQEDYDTAVLDRARSYFYDMRGLFEKYIRLEDA
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