NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0015032

Scaffold Ga0335007_0015032


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0015032 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6139
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010302Metagenome / Metatranscriptome305N
F024955Metagenome203Y
F030063Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0015032_3113_3688F010302AGCAGMVDVLLNTDDVVVIGPPASIDLLVDIGPQGVRGSKFIVGSGEPNALTLNNVLLGTTLILGDMYINTAPGENYGYMYQYISQPGGNTWVQVLKINPAIYSTIDTVTFTSGAGSTTIPISSIVTVSGSPLTASNFNVQFQIEGANPIAASMEIPALVGAGSNLVINFDAVQYSGGSWSALTGSKKVHIFISIV
Ga0335007_0015032_3725_4204F024955GAGGMAVENIGSLVPTKIPSLIDDANIQDALRAYHYGSYEFDTAETNPAELLNPSIAYTINSLQSQITTKAALEVAARNISSAQNSVPVAANFTAFSETVPNGYIWVDKDAAAPVGYISATSVYTATQPSTGLANGVIWIKKGSVPLEMYVYNSDTSSFDQVV
Ga0335007_0015032_4204_4635F030063AGGTGGMPTSFNYDGKPGYIYSAADDTWYELSGKTDTTGTFEWAGPHTHLSSVTVLDHLVGKKGLNNYLNPSARDASITSPVAGSICIIRQDGSGNTIHQLQYYNGSSWVAFIPSQAGNEGKYLQTDGTITSWVDLDDPIPTSFMLGGM
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