NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0013078

Scaffold Ga0335007_0013078


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0013078 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6594
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F010307Metagenome / Metatranscriptome305Y
F023592Metagenome / Metatranscriptome209Y
F027413Metagenome / Metatranscriptome194N
F030767Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0013078_1386_1550F030767AGGAGMAILKSNCRICKKVTQHEDRVVTENLPPYVKTLQCVSCGVMGVVLMEDVHVTEV
Ga0335007_0013078_2848_3006F023592AGGMNSLDILIGLAACGIGFMFMVIGYSVGFKHGHGEGFVRGRAISQALKDKELI
Ga0335007_0013078_3563_3754F002269AGGAMNKKQLEAAAKSYARAALASVAALYMSGIQDPKVLANAFIAGLVGPLLKAVQPSEKQYGLGSK
Ga0335007_0013078_4195_4368F010307GGAGMDNVTFIEITDSLTNEVIEHAIIDRGNGEFTSMPKATYEAQQAEQSTPNLPRNADKL
Ga0335007_0013078_5702_6592F027413N/APKTEDGTQIFDILNELLINSWFEVAPALQWQDYDPTTTWANAENVGLGEIDQPGLYEMISRTADPFSSYNLCAQIAQSALGNMYEDKAGRVCYADADHRTAYLSANGYTTISANYAIPSSVKSILQIGKIRNSLVFNYGNNYANQATALDAASIANYGRYQRSVSSNLHNLSDVNDVMDRELGLRAIPREQLQAITFRLDNSELPDAERNKLINVFFGEPIVINDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPSNLVWTGVNATLIWENAFGGLT
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