NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0011727

Scaffold Ga0335007_0011727


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0011727 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6964
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (65.52%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007919Metagenome / Metatranscriptome342Y
F010764Metagenome / Metatranscriptome299Y
F048267Metagenome / Metatranscriptome148Y
F072267Metagenome / Metatranscriptome121Y
F091921Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0011727_1824_1997F091921GGAGMIELRIVENELGVKPDIQYRFMLFSVGQGGYLCPPNPDMKWSEWRTAEWVKAEEIEK
Ga0335007_0011727_188_316F048267GGTGGMTDEEWETALKSMNDGVKKWVDEEIDKIKYNIIKDIIDKELK
Ga0335007_0011727_2583_2750F010764AGGAMIEIQKNYKLTLTENQARELYEFLRGAKDVGHLSVDRDLILVYNELKKIFAIGIR
Ga0335007_0011727_3737_4261F072267GGAGGMTERIGYKLNPNKLKKAPQSILPYVVGAFYYTEDFEYFDVIKPYLDIPEPPKSLEEISQELDEKIDKRIERVKEKFNQLAYTQEYQYQVKFNRIFENFEYAKEHGQFPPKLILTCSSGLSANSCISSNFVIKSGGKEVGYYTFGNGYLRYYMDKKPNAITRWFMNKCLSIRWVD
Ga0335007_0011727_5607_5792F007919N/AMTERVKFTQVSRAICPKTGIHYLDAVDKNGIHWMAQMETDVEKWITYKELWYQDPQQPYH
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