Scaffold Ga0335007_0009577

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0009577
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7688
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038999	Metagenome	164	Y
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F055552	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0009577_2071_2499	F038999	GGA	MSATIAYPCACNGCRNYPTYPAEIWHESQIANKAQGYYFSKDTMRFFKSRIVDFKRVGITPRADSLMVIVSNKQGDDSPRYYEIVTLCLYGELGREWYKDTDGLPFTRYESLRQARNSARWNCTVGAQICECHGCTLDKAGR
Ga0335007_0009577_4557_4787	F055552	GAGG	MNKEYWQAKVNLCRQVGIEQLMAGDIPNGTRNLKRMVRAMEELNLLEALDEDKPAEDMWASLITNGLLLAGEGESK
Ga0335007_0009577_4967_5269	F040536	N/A	VGNIGYVLSVMRGRVMDKLGKLIAFHPAKSGLKLFYEVVEPDGETRWGGERAFDAISWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGVN
Ga0335007_0009577_5620_5922	F041090	GAGG	MRSKTIDELPENIVVLSDIRRQKHVASSPYGPVSQGLTTSQRTSRDQALTELLNSLENVVADLNSKSYTALDTLIIAIQQARVALSDTQTEKGGTKCSPE