Scaffold Ga0335007_0008934

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0008934
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7970
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018140	Metagenome / Metatranscriptome	236	Y
F028171	Metagenome / Metatranscriptome	192	Y
F033776	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0008934_2100_2333	F018140	GGA	MADEPKTVGGVFVASLPAAIAAGVFAIGALLVNMQIQSARIEATLQQMAESVDELKTDAKAQLADLDKRVRQLEIRK
Ga0335007_0008934_6234_6467	F033776	GGCGG	MVLSDRRPKGKGRNFTVNIRMSREEIEQARELGGGNVSMGFRWALRYASDRNMRPMTLTTLLRSAAVLASELEDRKR
Ga0335007_0008934_6721_6921	F028171	GGAGG	MDHIRAKLEALISDSGMFHAGQQEERQRLATLLRARLDQLANLPCHPHISARREELLNILQALIQS