 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034283 Open in IMG/M |
| Scaffold ID | Ga0335007_0005405 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10237 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008130 | Metagenome | 338 | N |
| F014617 | Metagenome / Metatranscriptome | 261 | Y |
| F044491 | Metagenome | 154 | N |
| F080030 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335007_0005405_366_575 | F008130 | N/A | MVETPTIGDAMADAKTYVYEVYTTHLDNSQMVLVQIFRDPKTDKVLHAQIAFKDAIGDSWQTPYQLEKK |
| Ga0335007_0005405_5189_5485 | F080030 | AGG | MRIKLKLTRTVNAEPEYLYTTLFSIALWEEKFNKKPLDAQNSGFRDWSFWVYTLLKVQGEKLPDDFMKWLEQNPEMTVLPEADVTNPNPTDAALIDGN |
| Ga0335007_0005405_5944_6114 | F014617 | AGG | MIYTIASSKLGIIGDPYLPAAGINVAALISGGFIVKQSTPKPKKPAKTSTDTNEEN |
| Ga0335007_0005405_6479_7117 | F044491 | GGA | MATYNTATKQLLDNYACISTLEQSEIVVGENITVSGLSAPFAGTFKVLDLPQYEYIGVDGNTGEFLFNPNVARPNQIIYACTGTDVNYVVDYTGSVVYTQTCTWISVSDLITYLGVTISNPSDDYTLATQATNASNMFCYRRRQESSYKDSLSVSPGTDATLGTLMYAAALWRSRGSIETAFAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |