Scaffold Ga0335007_0002582

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0002582
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14372
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F001872	Metagenome / Metatranscriptome	623	Y
F002421	Metagenome / Metatranscriptome	560	N
F003964	Metagenome	459	Y
F044439	Metagenome / Metatranscriptome	154	Y
F083894	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0002582_1_348	F044439	GGAG	MNYLAEKIIGLVLCTVFGVTALTGAPSASSDVSSIMPLKPISVEPYLIEPPTTTSSTVYIDPYTSACEQFSALAINLGWPADQRTVLESVMARESGCRPNAHNKTLNRDKSQDWGL
Ga0335007_0002582_12851_13099	F083894	N/A	MGNDFSNHVAGEEMTFDEKQTGATPIEIIDYLRGVIDTLRAEKALLEKRYKDLEASRETWQKLAQAWEWLADNKRIVPADEA
Ga0335007_0002582_13691_14089	F002421	AGGA	MKTCTICKETIAYPEITGKTHFVCDGRVPARKNAPFIEGMLASQSSADARWTKPEQNQVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELSYAQRGGAHDHAQRLSVWAGI
Ga0335007_0002582_5234_5746	F003964	GGAG	VAEVSAKIEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPTGVPLSGMARNWQTRSGFQILPWIPGMKQKIAAKINTRAIKEYSGNKTNVGTFAIQWKGATGTMFDTSMSGSLGRALTARYGSRSRVMWKAYEQRQSDVMSEMEQLVKRVMDEANRETA
Ga0335007_0002582_562_1002	F001872	AGCAGG	MNEFIKQVIHHSGGALWNNGSYGRRDMKGKPGSLSVHATGRAVDMSYRGDARHPQSSRKSALPFVEKLCANANELGIQMVIDYFPSPHGRAWRCDRQAWSKYTKPTVSGAPGGDWFHFEISPQAADSVIFVKAAFLKVFGEIPPKA
Ga0335007_0002582_7020_7652	F001326	GGAG	MATYTVTNKYLIDDFAVLQLLTPSEIAVGQSITVAGVDATFNGTYSVRALPQYLFIGVDTEGDLLYDYQMPVADQVLYAKTASDVERVAASGTVAYDPVCTWVTAAQVATYLGINIPNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSASQQSLTPIVKQLLGIPRPAVA