NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0002258

Scaffold Ga0335007_0002258


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0002258 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15252
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F027413Metagenome / Metatranscriptome194N
F030767Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0002258_12813_13427F007029GAGMGFLDNYEDVNARIKRFRSEFPSGRLVAYIEDIDIIKGTILVKAEAYREYEDMVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRVIGLLTPSLEHNSRPTVQDMQKVETLPADSDPWSKKASIEDMSTMATAILEIGTQLGGELVAEPPRCPHGTMIWAEGTAKTTGKPWAAYKCTEKLRANQCQPYWHVLGSDGKWKPQV
Ga0335007_0002258_14099_14260F030767GAGGMAYKTKCRLCAKVTEHIERVVTDNLPPYVKALQCVKCGVMGIVMMEDVINADV
Ga0335007_0002258_8758_10002F027413N/AMTWLPEWKIIVGTTVYDNVLSVTMATGRDDIDLQCNAGYARLEIVNTNNLPFDIDVTDAITLELKNSSGTYVPVFGGEVSDFGISVRSPEEAGFITIGNILAVGSLAKLTKALFPDALAKTEDGNQIYDILNELLINSWFEVAPALQWYNYNPTTTWANAENVGLGEIDQPGLYEMISRAAEPFSSYNLCAQIAQSALGQMYEDKAGRVCYADADHRTTYLSTNGYTTISANYATPSSIKTILQIGKIRNSLVFNYGNNYNNSATAVDTDSVANYGRYQRNVTSNLHNLADVNTVMNRELGLRAIPREQLQNLTFRLDSTALPDAERNKLIDVFFGQPMIINDLPISMFNGSFNGFVEGFAIRATPAYVDMTLTLSPTDFSLVAPQWDTVSPSNLIWTGVNATLEWENAFGGLT
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