Scaffold Ga0335007

Basic Information
Taxon OID	3300034283 Open in IMG/M
Scaffold ID	Ga0335007_0000976 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034283 Open in IMG/M

Scaffold ID

Ga0335007_0000976 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22088
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (39.58%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

22088

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (39.58%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039944	Metagenome	162	Y
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y
F072111	Metagenome	121	N
F093535	Metagenome	106	N
F098930	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0000976_13564_13752	F056323	N/A	MADDLKLPPAVVALWATDGYIPYVMREGMPLFDPVAVGTHIAKQLNELNKIDDGNTTDTTTN
Ga0335007_0000976_14129_14353	F072111	GGA	LDKPQVGEGGGMKKQTILALAIFGHLFLFLFVDSLFEAPTKWKMWAFYGSSLLSVAVWAAYVIHEDDNPKGGAA
Ga0335007_0000976_14814_15122	F046179	GGAGG	MSRPQWENDALSIITGEGVANGDALWVLECIQKAADDVAEMDDADRFPLYMEYHGNDKAALCNLDAETFADVLACLGIDLHRLETLWERKHIDPPIDDWSME
Ga0335007_0000976_16589_16732	F039944	AGG	MTLRDLFLALALVVLLGFAVAVTSGKLGGPSDIEMRVRASEPVNLKN
Ga0335007_0000976_7539_7877	F098930	N/A	MNESLEKQPSNRKLNQKRKFSFGSGRRRNQLQDKKINIRVSLSVETFKRVDNLAKRLDCSLSSAVERLIRTQESESIEPTREVNWDEYKAKRQFYQLTDVLDASFRRRGRKA
Ga0335007_0000976_9620_9952	F093535	AGG	MPSPHGKDEAMIIDGMTMVHRNKYLENMKKYQEIENLIADIWYQNPRWPSTFSVCCNGCGNSARGGRECIYCLEKELSKLTSQEDARSFVSAVRQVLTAEESLREHSKPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335007_0000976

Overview

Ecosystem & Geography

Associated Families

Sequences