Scaffold Ga0335007_0000575

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0000575
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27986
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009064	Metagenome / Metatranscriptome	323	Y
F020851	Metagenome / Metatranscriptome	221	Y
F044490	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0000575_22341_22463	F020851	AGCAG	MNKDLVNLAISMTEIDTGITLSLQEREDMVELILARINKT
Ga0335007_0000575_23129_23608	F009064	N/A	MIVTLTPEEVRVCTMLGMERWLTKFGSEDRPNYAKGKTDGLLEHELLANVRANVCEWAVAKQYNVSWNVPWYPNALHPQRKGLADLSKNIEVRSVRTQTSIPFWNKDKDNYIFGAKVLDTEYYSKVEVYGHIKASDFMTDKYYDNYISGWRVPTSEFSE
Ga0335007_0000575_27332_27562	F044490	GAG	MMRIRVLRASKEEKVAVAMGRLLADFHLDLEKVGYYLAKATPHVIYRRALEVLASAEFQENEVEQNRIGYRNDRLY