Scaffold Ga0335007_0000539

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0000539
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28595
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025465	Metagenome	201	Y
F033727	Metagenome	176	Y
F039051	Metagenome / Metatranscriptome	164	Y
F088280	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0000539_13015_13230	F039051	N/A	MIDVSKVIEIIKKQGATGVLALWLWYTHSDVQDLKHRLYECYGKNNNTATKSINDTTHFAIVPKDELIEVE
Ga0335007_0000539_17608_17901	F025465	N/A	MDELTIIKGKVLLDTTYLKIKISLEEIKQKHEHRTDIINSMERSLADLQEVKISYDAMEKELRTALQQNFRLEKLLQEEKFKVLDLQLQLQTKNYEL
Ga0335007_0000539_21166_21369	F033727	N/A	MREQAKVLSEANEVTRSMVKQYLQKHEISLNAFSKEVGIRQPNLHKFLNGSNLSSKSIERLGEFFSK
Ga0335007_0000539_21530_21886	F088280	N/A	MKNLFMNCPECDGDGYVTIDLNDTHIPYEQNPVDFTCMSCDGKGVAIDKDEVEDRMGIIEDMIQGMQTRMRLHSDMIMTCKKGLLHELSEKYVYRLDTCSRALGRLLNYKRKLHKLAE