NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0000355

Scaffold Ga0335007_0000355


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0000355 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34632
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002149Metagenome / Metatranscriptome589Y
F025460Metagenome201N
F030376Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0000355_10740_11108F002149N/AMTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGIVEDKDGIAGVALARCIKDGQEPKHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMSFMRKARV
Ga0335007_0000355_3169_3534F030376N/AMKAITMITLTAMLMASVMAEDDDADAVDFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYFKSGSSVVGKDSTFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDN
Ga0335007_0000355_7874_8623F025460AGGAGMAVIDVPELMNMFRQGDIDKQAAAEAQRKQALEERAMALKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTITNEQSLENEDINAQREAINTRLTKLSQEKLKQELEIAKGDTRTGAMELGLGLVGMKKRSDVMKELEAERGVLQGKMAELGFNRQAGQMETNVPDYQSEAMPLQATPQAAPQAVPQVAPETPAPAQAPAQQEAPRNFKSLQEAKAAGVKPGQLIYINGKPGRLQARQ
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