NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0000312

Scaffold Ga0335007_0000312


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0000312 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36146
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005738Metagenome / Metatranscriptome391Y
F073483Metagenome / Metatranscriptome120Y
F082386Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0000312_22178_22357F073483N/AVTVETKDLRLLKTDYGHKVKSVADRVTRLEKRIDWVEKLLWLSAGALISWLVTLVLRSV
Ga0335007_0000312_33858_34061F082386N/AVLTLTGNHWENVWSLDGEPETFDSYADADAALAEHLRECQWAVAAGHLDYMPTRDAFRIAPYVAVTV
Ga0335007_0000312_5111_5275F005738N/AMSWGVALRNGVAIGLGAVATLFSGTRDSGASVGNLLAESGDNLVQEDNGQLLLE
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