Scaffold Ga0335007

Basic Information
Taxon OID	3300034283 Open in IMG/M
Scaffold ID	Ga0335007_0000036 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034283 Open in IMG/M

Scaffold ID

Ga0335007_0000036 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	86732
Total Scaffold Genes	95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (21.05%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

86732

Total Scaffold Genes

95 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (21.05%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023065	Metagenome / Metatranscriptome	211	Y
F036563	Metagenome / Metatranscriptome	169	Y
F067544	Metagenome / Metatranscriptome	125	N
F098950	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0000036_58574_59215	F023065	N/A	MYTNSELIGRVKSANKFVSDDDLISDRYIYGLLKTKASTLLRREINLRRLLTSDNVYQAYECVHLIEAKGSECDLGCPVRRTKNKLPSIDEGLYSYFIQGVFNTSNSEELFPTTIRDFINHSRLRFKTPKKYYTIRNGYLYVLDPDVECVNMYAYFTESIEDIDGTECLSMYDKQFKFPGYLTDALIEMCTQSLMNYQRIPQDLEDNNRDEPN
Ga0335007_0000036_61975_62481	F036563	N/A	MNVQLNIEALKAKDCAFLSILDTSFYPVVPTSAEISITLPGFDDPFNFEFVVSEVNIFTAYSFGLTVEETDSFTPLPDGVYKLEFAPCPNVGVCTRYHLRTCKIDCRLGVQWAKHVDCCDDEKMLYYLDKIEFLLKGAEAHADLCNPAKATELYKKADDLLRRFELDC
Ga0335007_0000036_76181_76627	F098950	N/A	MKKLFILSALVTMMTSLSAQCYKIDTVTSIATVTEIGGRPIIFGAQTTLEEIASAKYQLCNEGSPISGKIKSIAMPEQLVNIVGLQFLKREYIVSTEINVNGILLQGEASKVVYVNAMFVSVEGIPHNRKAYSKALEKSFKSGFESLK
Ga0335007_0000036_7827_8324	F067544	AGCAG	MIDKWIYEDKLLNNGTTFSWTPKALEELDISEVISALKVARHSDPIKVIANPTPQPEIPITWVTEFIAKFSAKNIGVSGKTTDKVSVVKRLIKFLAEYDYTLDEIAKATDLYIDTLKGQGSIRYIRECGYFISKKIDGVEQSDLAKWCEELKNGTGPAYNSHQIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335007_0000036

Overview

Ecosystem & Geography

Associated Families

Sequences