NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370492_0023468

Scaffold Ga0370492_0023468


Overview

Basic Information
Taxon OID3300034282 Open in IMG/M
Scaffold IDGa0370492_0023468 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2534
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)63.8785Long. (o)-149.2588Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081591Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0370492_0023468_2230_2502F081591N/AMEVPQSEGDRRLLATILLKEEELLTAEGLEGAVRALRRIHLRRRLEEVQRELQSGRTLDPQQVQALLEEKMRLKRALMDPSLATEGNDAA

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