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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034282 Open in IMG/M |
| Scaffold ID | Ga0370492_0015779 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3096 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 63.8785 | Long. (o) | -149.2588 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030458 | Metagenome | 185 | Y |
| F031889 | Metagenome / Metatranscriptome | 181 | Y |
| F041367 | Metagenome / Metatranscriptome | 160 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0370492_0015779_1349_1963 | F031889 | AGGAG | MYGDIPAEGITIRVPNPPKTAMVRLPTSQEMLDRLAQQKSIRRTIGRRKSQTEFVPNPKADLDLFNQIRLDKGGAEFDEFEAGNAVSKLTYCEVTDCQRAGDEYQVKLKTPFGTTVHTVKIPTQRDITVYRRTVVSSTDLPHGQEELRYRIDPAVDLYDSVASKIEGYADSFKPADVPPHHKSAVTVELVQAIDDLDPALDPNS |
| Ga0370492_0015779_2002_2406 | F041367 | N/A | LIHRSVRACELCDGGADGPRGCPDANDVACGKCGVVRTVEDTNAPGACPQCGGWQFTVNRCLHCKLDDLDYARTHSNAGRLFERLLELEFDAAHFSIPWSDVTAEEVRGLQILKEERDRYQREQAQKPPNAFPN |
| Ga0370492_0015779_2390_2839 | F030458 | AGCAGG | MPFQTKITRARFVLGPFTAEDMQTIGGVLVDSISTRIRKAFDVNDAPAKPLKPGRNGRRGYPDYKAARGLQPFRDWFWTGRTMRSLKVKSAGENRVVIGFVDPNADRIAHVNNLRERQFGVSPRDRITLNSVVLAVLKQARVVRVAKAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |