Scaffold Ga0370481_0000018

Overview

Basic Information

• Taxon OID: 3300034281
• Scaffold ID: Ga0370481_0000018
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122688
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (23.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9141
  • Long. (^o): -147.8344
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064436	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370481_0000018_89440_89637	F064436	AGG	LAGVAVKVTEVPAHIGPAGTAAILTLAGKGGFTVIGTVLDVAGLPVAHVEFEVNTHVIKSLFAGV
Ga0370481_0000018_89992_90171	F064436	N/A	VNVTELPAQTGLADAPIDTLTGRFGFTVIGIVLDVAGLPVAHVEFEVNTHVIKSLFAGV
Ga0370481_0000018_90511_90756	F064436	GAGG	LVGVAVNVTELPAQTGLADAPIDTLTGRFGFTVIGIVLDVAGLPVAHVEFEVNTHVIKSLFAGVYENVALFGPAFTPFTFH