Scaffold Ga0334997_0188772

Overview

Basic Information

• Taxon OID: 3300034280
• Scaffold ID: Ga0334997_0188772
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1359
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007029	Metagenome / Metatranscriptome	359	Y
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y
F066777	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334997_0188772_138_647	F029049	N/A	MSRLAKVVLDRSQEITAHRVGLERTIVRNANPSDASNYGQVYKNWHELVWQEAESAAAEIAVANYFGDYGFTPAIDNAHDTADVGDNIEVKWTKHSNGHLILQNRGPGRPNDVAILVTGFSPVYVLLGWMPVHMAKQPRYKHPHQNNFWVPRSSLFEMQYLKRSNYGDV
Ga0334997_0188772_2_151	F030767	GAGG	MATYKTKCRLCARITEHIERVVTDNLPPYVKTLQCVKCGVMGVVMMEDVK
Ga0334997_0188772_635_841	F066777	N/A	MGTSGITMGELTFIKDGLATTIHDNGDMTVVAAKQCDECFTWQTDLGGFNVRDVSGEVVLWLCALCRA
Ga0334997_0188772_823_1359	F007029	N/A	RLIAFIDSFDIEKGTILVRAEAYRKYEDQVPSAVDYAFGNVNTYPQNMRKWMVEDTVTSAFGRVIGLLSPSEGGRPTRQDMEKVETLPASADPWSTKASIEDMATMASAVLEIGKELGGELVAEAPRCAHGTMIWAEGTAKATGKPWAAYKCTEKVRSNQCNPYWHVLNSSGKWVPQV