Scaffold Ga0334997_0021474

Overview

Basic Information

• Taxon OID: 3300034280
• Scaffold ID: Ga0334997_0021474
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4470
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008812	Metagenome / Metatranscriptome	327	Y
F057320	Metagenome / Metatranscriptome	136	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334997_0021474_2199_2558	F008812	AGG	MIQWIGIVVTILGLAYTGVKDYQKGDIKFPKMPQKQVLTKPVYPIQYCLMAYDPNIDRIFYLHENGIWYDYAPQQRRYPTTPQPYQDQGQAAVAGSYGTQGTPAYRYGQSPQASANPIR
Ga0334997_0021474_2903_3133	F089832	GAGG	MSKYYIKCGTLELIYSTDKKPMAAAADVLWESNKFDILDEHFYVDERGFKDYSTALPDTKVYKTEKIVTKAGWSME
Ga0334997_0021474_3133_3696	F057320	AGGA	MSYVGLYDDAGSKNAFYIIKDKKINRKRVGFKEFENEQEAKFAHRVQSHLAQFDLAPMVYGDVGMIRRHDGELTCYGYLTEVARPMPECHDDDCDGECFQSECQNGTTICEVVYDLGEHGLEYNDAHKGNFGYVRRRGSWVPVAIDLGIESFTDWDESIYGQFDYDADDDAYGECNCFQCCKFREEQ