Scaffold Ga0334997_0001036

Overview

Basic Information

• Taxon OID: 3300034280
• Scaffold ID: Ga0334997_0001036
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20120
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (82.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035193	Metagenome	172	N
F037595	Metagenome	167	Y
F042160	Metagenome	158	Y
F060701	Metagenome	132	N
F093230	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334997_0001036_10350_11324	F042160	AGGAG	MTYTFSRYFLDGFGTEEQLNELLHSDVLPLVRELQFKYGLKVMGKVMNVGYPQEDKDSYMMCHPNGLAVCKVWTTSLGGANNDQIEYCFRTPFYAKSRGSDQSDRETIRSTKLSSLMAVLKRQAAVRSKKDIMDNKIKMVRSGVHALRQSMGNSDKQNSFTPDEIHAMLATLLGESTNGLSVPLDLNKCKNTLDIYKEADKIRNIKREESKLFFKNPFYLIGIDDYKHLLIGKFKMTVLHSDTSKMEYEIIEDFKRVKTIEEYPELVPLMTMMKVSYETKECRRLGVLNFPIMDKYDEGLDAVFFYGGQPTNYEHSWMATPCPI
Ga0334997_0001036_11297_11668	F035193	N/A	MDGYPMPHLIGELSPVVHPKNWDLIRVPVRKVDDQYIVYVADGFHRIYTDDTLPDVLKSKFAMINANGEKFLFDSKILRLTLYTNTHAPELDEVGWRASETYYCLVVDRLTLESLKGGIQNDS
Ga0334997_0001036_3576_3959	F060701	N/A	VGFVSTNRCPLQEPQGEIMIVSFVTALPDKQVEKATDWMQAMPRSVRKTLRLTKPRQRNVNTHDGVDDYLAMDCRVDTYHTQNLEFLDREYGFDEFGDIDDEHEGLTITEPMDEVTSFQYLTGYDIL
Ga0334997_0001036_4656_5060	F037595	AGGAG	MGYRSDVAYTIRFVNDRDTNNEQSFYTFLMEAKANPKCQIALAEVEIDHKKQAFYFSANDVKWYESYPDVDSHTALFDQAKDWVQQTLDQKTHCSIGAIFTRIGEQTDDVEEIAVGDYEWEWISVSRQIITDWS
Ga0334997_0001036_9253_10161	F093230	N/A	VREEEGQRVFDIVHGSNWKHITLTKAEHDNLAKQGSTKLRSYQQHDGTWEYYTYEVSPNILGVVRPDNTFEFTSENYGQGDRGILSTYGHGELSTNSRMGGMVWTGRLHGNGERGAFPIYKGMRVNCETMQPIKPITVVGRKVDRKVGKDLLAGYTDFYMTTEVMTKAMDYEVFVKTMLEVVNEHVPSGDFYLDHKEYTSVADKLIDIAPLDSAMLYIFAWDIGNMRWNLRRFSDSQMSRYSAHEDTPHTMFLNLKRRLNKEIYKANETVFKKVEYVNGEMYPPSEWGYTVMVDGQEVKQYD