NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334997_0000011

Scaffold Ga0334997_0000011


Overview

Basic Information
Taxon OID3300034280 Open in IMG/M
Scaffold IDGa0334997_0000011 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)124942
Total Scaffold Genes144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (11.81%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014380Metagenome / Metatranscriptome263Y
F015602Metagenome / Metatranscriptome253Y
F041189Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0334997_0000011_111448_111819F014380N/AMAVVSQVEKKAVMNTWEVTKYQIVTHCYVSKIQLSEADLDCLTYLALEGEQELTSFCSKVYDKKIFSSCQSARNSITKCEKKSLIVKEGKNKKKIFINPGMNIISSGNILLNLKILSLEAKES
Ga0334997_0000011_25068_25676F041189N/AMFNTKGQEIKTGGGTQKSLQPGVVYAHIYDAQVRTAKSGKKALELTLEGPAMENFEGWAVDRNNIEGEKFKGQSAKVMATIYTDDFNSQSPAKNDILYKLLFIASELGLRDDLDGITSNTIEEWVKEAINILKNKNLYFFLKGTEEEYNGKTIIKLSLPKFKFASSEKDGLDAFDKNNQYHYKALQNKPISGFEPAADDFEM
Ga0334997_0000011_6951_7343F015602N/AMSYLAGKYKKQDGLLKPLTLAGVKQYELYVSHIPDGAIVDFFYEVTHDDGTLPQLAKLHVMIKQLATHIGETPENMKLLIKDKAGLCIAREVSGREYFLAKSFGECSREELSLAIQAAIQIGEDVNCFLN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.