NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335052_0187932

Scaffold Ga0335052_0187932


Overview

Basic Information
Taxon OID3300034279 Open in IMG/M
Scaffold IDGa0335052_0187932 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1197
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F062749Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0335052_0187932_609_800F062749N/AMKTKPSLILWAISALFMSFWAVKFAMTGVFFGNSELLTFSISFCASLTSAVCGAGFMQQWLKK
Ga0335052_0187932_785_1195F041191AGGAMVKKMKLLYKPTKLTCEFIVPDIAKSEGVQKVIGFSRGWHHYNSIRLGIRKENDYCVLYFYAYIKGERTIQRIGRYEIGDLVKCELNWGSYIECKANDGYAFRVAPKCSFPIGYLLGNYAEKDGTNTRIKFECKLNN
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