NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335052_0168585

Scaffold Ga0335052_0168585


Overview

Basic Information
Taxon OID3300034279 Open in IMG/M
Scaffold IDGa0335052_0168585 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1280
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003964Metagenome459Y
F046365Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0335052_0168585_101_613F003964GGAGVNEVSAKIEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANALVPTGVPLSGMARNWSTKSGFKMLPWVPGMKQKIAAKINTRNIKEYGGNKSNVGTFLIQWQGATGTMFDMSKEGALGRQLTARYGERSRVMWKAYVQRENDVMSEMSQLVKRVMDEANRETA
Ga0335052_0168585_1055_1279F046365N/ASYAASESYAVLSALLGTKCYVKVSPAAGANSATNPGFELTGTYLSAIPVINASLGELSTYEIELQGGVYTIDVT
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