NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335052_0089871

Scaffold Ga0335052_0089871


Overview

Basic Information
Taxon OID3300034279 Open in IMG/M
Scaffold IDGa0335052_0089871 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1862
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067430Metagenome / Metatranscriptome125N
F076862Metagenome / Metatranscriptome117N
F102512Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335052_0089871_1225_1473F067430N/AMSTSSTDQTKDNKEKLVESIEAIFGLLTLLDNYCKILIDKGKPDPSKGSIETAKESIVEMAKRIKEVLEIENTKIDFTNGKA
Ga0335052_0089871_1484_1708F102512N/AMSVRKLIDEALVTYIRREMCDNIVMLCTEMKTFAEILEKFPVERLQLLRTEVIKVHNQVFGMMEEVKESFLQLI
Ga0335052_0089871_523_915F076862N/AMSNPSHDSTVEEITKGIRTLDTDNQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDIFKMAKNLLESNSPRTHTIARQYGRKYPPLTGPLARMLMDLADLEDLVSCKEIEEMKEVIEDLDNW
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