NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335052_0037237

Scaffold Ga0335052_0037237


Overview

Basic Information
Taxon OID3300034279 Open in IMG/M
Scaffold IDGa0335052_0037237 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3027
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005054Metagenome / Metatranscriptome413Y
F016967Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0335052_0037237_1184_2164F005054N/AMAEILINSQSPIVHQIFWNGDIAVADALPIVKIYDVTLDARVSPAVLPTTVLATITSTLDENNPGTYVVNVPYALTNRNKTLKVNWEYSVGGVAVVRSDDVQVVTPYIDFNYIQDLGYSTDSSDPSYKSYKELIRAERYARKQIEEYTGQKFYLYDETLTVYGYEYDTLPLPAKIYQLHTLSVNDILLRDNINNIDNWNFPVQISESGYSIRINRAGMVDNTVYTANGMVPPSIHDYSGVFHSGVPYKVFARFGWEKVPENVELATAELMKDYFSKDTIWRNKYVKSISTFDWDFEYTGDAYTGTGNALADNLLADYVLTIKAEII
Ga0335052_0037237_2597_3025F016967GGAMLIQAASGLERMMYSNQNGPLKDSTVAQISAYVYYEAAVISKLTTNRAFQNSFGKLMFDQINLDFGNYIDALARSKPKSLHHVYEWKKTGNKSARLFKLNKGVQVGLSFSINYQFLPSRTIVPSSNGKRRHMFIGKASVMERG
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