NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335052_0034107

Scaffold Ga0335052_0034107


Overview

Basic Information
Taxon OID3300034279 Open in IMG/M
Scaffold IDGa0335052_0034107 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3169
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079812Metagenome / Metatranscriptome115N
F103125Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335052_0034107_2_184F079812N/AMSTKYIMDGNNRKIGYVKDSGSVIYAHGPNGENVGYYQKSTDTTFDRRGKRYGFGDLTNA
Ga0335052_0034107_2715_3167F103125N/ATLWLHCAEYEYTDGNPNAKSLIEKLPTRKETKVWWQQIFPITDTVRLYAYDSDTNDTYDYWIEYDVTFVDGKVTKAKLLEFTATDNSERKERHRKDVEYWKSRRIFESTLFYRLVGKYYNKLISFICRSIHKSATWITYKIWKVEKFLKI
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