Scaffold Ga0335052

Basic Information
Taxon OID	3300034279 Open in IMG/M
Scaffold ID	Ga0335052_0002216 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034279 Open in IMG/M

Scaffold ID

Ga0335052_0002216 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12198
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (15.38%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12198

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (15.38%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F030677	Metagenome	184	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335052_0002216_1268_1807	F005050	N/A	MACVSYCDSSLLDHNLVNCNEYKLGGVSAILVGACGTELVDPSDAVEVQALITAGTAKLIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLYDANVTDENNTFWNDVNNRRIAWVLAFMCDSGKVIYINPPVGITTSANFILPEQNNELQRYEVTFSWRDKNIPAQYDAPAGIFG
Ga0335052_0002216_5242_6153	F008936	AGGA	MASFDSLVNQKIKLFESVPDKLATAAIKTQAEIWRKIRPILDDMDVSAAGNIEQTEGNIRRIGLIADELKKVLAGSEYKEAVRAFLGSIDEGVQLTNEIARTFESAFEPTEVQKQLLQISKQNAINTFFGAGLDARFTQPFLEQLTTNIAARAPLREAVVALEGIVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGIEWFEYLGGEISTTRPFCENREGGIYHRKEIEAWGAGKNSAGIRDIQDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPERKVPDTVKARARAEGFID
Ga0335052_0002216_8912_9958	F024730	N/A	MCIESLLGLRGCESPEPSTGLYIDDLGINQTFLGQLITDQYRNGVELFEDKRAFAWRKLSSDVLTKLSPMMKSDTIIESKRVGQVVSNYANVQTALGAGNYGGIRLKIDPNTVSYLNFYLADINLAIASSNTNVPVLIFDMTTGKLLETITYAEGALDQFIGKTFTSAKRKLDIAIVYESTMNTVKFTPKKGVCTSCGGGPKEAHMCPFVDAIGIELTTDGTNVLTSTSSKYTTGMSITYNVNCDRQGWLCSIGGTMALSLAYATAVEIYNYALTVSPNQRVNTTVIVNRGSKPFATADAFEGIVAARDIAATRYSEDLGATLQNMRLPDDTHCWDCRKNMKYVTALP
Ga0335052_0002216_9960_10535	F030677	N/A	MPTPAEIQKNLDELYNDWTNKFTALYGPVRELKRIMFKRIFGTGSTGGTNTAGNKLPTVLYKTTPIYVSPRTLANAPSSFKVGKRGEPIKSLYFPDGYAQLKKETSRKLPLELTGRLKGGFLSQEVITEGLTAGIGLPDSEKEKAQGLQFGNGKRFKGYGPIFQPTPEEQAEMLEDHAAELVQQIINAMNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335052_0002216

Overview

Ecosystem & Geography

Associated Families

Sequences