Scaffold Ga0335052

Basic Information
Taxon OID	3300034279 Open in IMG/M
Scaffold ID	Ga0335052_0000533 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034279 Open in IMG/M

Scaffold ID

Ga0335052_0000533 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23534
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (71.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

23534

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (71.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004255	Metagenome / Metatranscriptome	446	Y
F007265	Metagenome / Metatranscriptome	354	Y
F008943	Metagenome / Metatranscriptome	325	Y
F010764	Metagenome / Metatranscriptome	299	Y
F014121	Metagenome / Metatranscriptome	265	Y
F030059	Metagenome / Metatranscriptome	186	Y
F091921	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335052_0000533_13948_14208	F007265	N/A	MTFQPYNVVPGTEIIHSITDVYEFSDEVEGCTHTVKLQADNGGVYLESTGKQHDSQHRGITEYMSIANKELAIVVAKRILELYGVN
Ga0335052_0000533_19761_20051	F030059	GAGG	MNSNIKDNLILIQEVATKALEELKNSTERFGGVNYADLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDLQDYMLEYLKDNLPNNLGWSIYVELDW
Ga0335052_0000533_21042_21197	F010764	AGGA	MIEIQKNYKLTLTEQQAKELYWILKDVNLDVDNELKLVYHELKKLFDTGIR
Ga0335052_0000533_22172_22345	F091921	GGAG	MIELRIVENELGMKSDIQYRFMLFSVGQGGYLCPPNPDMKWSEWRTAEYVTAEEIEK
Ga0335052_0000533_22593_22808	F008943	GGAGG	MKFDPDWIFLSIPVFIIVAASVLAYDAQQQRVLFQQTYNKNLECRQALKDQTVGRVNEICGDVPVIGDFVK
Ga0335052_0000533_23351_23533	F014121	N/A	WETFKAELIVEPTDDMKQALASSIRVISSLIYRDGVLANEPWLTHTAQELNEIAGDVEAL
Ga0335052_0000533_8020_8193	F004255	N/A	MNEKSKIFYDIWKCAYQRRTLYKGTDREYREHETIRMCLDMKDVKFYQFDTEKPHYL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335052_0000533

Overview

Ecosystem & Geography

Associated Families

Sequences